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Thinning Seedlings

A small plant with four starter leaves in a plastic cell with soil.

Thin to Win!

What?! I have to toss some of these perfectly healthy seedlings I worked so hard to start? Which do I save and which do I not? That is the reaction of many a new gardener upon first learning that thinning seedlings is a necessary step to ensure healthy growth of plant starts.

A greenhouse tray filled with young snapdragon seedlings
These young snapdragon seedlings are in need of thinning

The reality is that, if left in crowded environs, your seedlings will eventually suffer.

What is thinning?

Thinning seedlings involves removing some of the seedlings sown too close to one another so that the strongest ones can thrive. This practice ensures the proper spacing of plants, either in cells inside or in the ground outside.

If your seedlings are indoors, thin them out until there is only one left in each cell or pot. If your seedlings are direct sown outdoors, thin them according to the spacing requirements on the seed packet.

Learn how to start seeds

Several large greenhouse trays filled with young celery seedlings
Celery seedlings before thinning
A greenhouse tray with one young celery seedling per cell
Celery seedlings after thinning

Why should I thin my seedlings?

Thinning crowded seedlings ensures that your plants have plenty of room to grow into strong, healthy, mature plants. If left un-thinned, crowded seedlings will compete for nutrients, water, air, and root space, and that will ultimately stunt their growth.

Learn more about plant care

When should I thin my seedlings?

Thin seedlings when they have one to two sets of “true” leaves (in addition to the first set of leaves to emerge).

Four rows of tiny, very young radish seedlings
These radish seedlings do not yet have a set of true leaves and are too young to thin.
A greenhouse tray with many young pea seedlings
These pea seedlings have at least one set of true leaves and are ready to be thinned to one seedling per cell.

How do I thin my seedlings?

1. Decide which seedlings to cut and which to keep.

Best practice is to keep the strongest seedling. How can you tell the strong from the not-so-strong? Look for the one with the thickest stem. If they’re all the same size, pick the healthiest-looking one.

2. Preferred method: snip, don’t rip.

Once you have selected which seedling(s) to keep, cut the others at the soil level with scissors. Don’t pull the seedlings out; if the roots are connected to the one(s) you’re keeping, the ones you wish to keep could be pulled out as well.

3. Alternative method: transplanting

If you would like to try and keep all your seedlings, gently separate the two seedlings from each other. Then move one of them to an empty cell, being careful not to damage the roots. Because seedlings’ roots are delicate, this method has a certain amount of risk.

A hand uses tweezers to hold a small seedling lifted out of the soil.

Remember, while perhaps difficult to accept initially, thinning is a necessary part of gardening to ensure that your garden will eventually be filled with healthy, happy, and flourishing plants.


Originally published in April, 2023, by Sara Friedl-Putnam. Updated May, 2026.